CIRI-cookbook
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CIRI2

  • About
  • Usage
  • An example of running CIRI2
  • Test of CIRI2
  • Q&A

CIRI-AS

  • About
  • Usage
  • An example of running CIRI-AS

CIRI-full

  • About
  • Installation
  • Running CIRI-full pipeline
  • Running CIRI-full step-by-step
  • Running CIRI-vis
  • How to run the test data set using CIRI-full

CIRI-vis

  • About
  • Installation
  • Commands and Arguments
  • Example Usage

CIRIquant

  • About
  • Installation
  • Usage 1: circRNA quantifcation
  • Usage 2: RNase R effect correction
  • Usage 3: Differential expression analysis
  • Test data

CIRI-long

  • About
  • Installation
  • Usage

CIRI-long Sequencing Protocol

  • CIRI-long Nanopore Library Preparation

circAtlas

  • circAtlas v2.0
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