CIRIquant: comprehensive toolkit for circRNA quantification and differential expression analysis

Build Status GitHub release (latest by date) The MIT License GitHub All Releases SourceForge Documentation Status

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data



Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

Release Notes

  • Version 1.1: Added support for stranded library and GFF3 format input.

  • Version 1.0: The first released version of CIRIquant.


The code is released under the MIT License. See the LICENSE file for more detail.

Citing CIRIquant

  • Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9